pyglotaran
v0.6.0
Contents:
Introduction
Installation
Quickstart/Cheat-Sheet
Changelog
Authors
User Documentation:
Overview
Data IO
Plotting
Modelling
Parameter
Optimizing
Plugins
Command-line Interface
Developer Documentation:
Contributing
API Documentation
Plugin development
pyglotaran
»
Index
Edit on GitHub
Index
Symbols
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
Symbols
--data
glotaran-optimize command line option
--dataformat
glotaran-optimize command line option
--model_file
glotaran-optimize command line option
glotaran-print command line option
glotaran-validate command line option
--nfev
glotaran-optimize command line option
--nnls
glotaran-optimize command line option
--out
glotaran-optimize command line option
--outformat
glotaran-optimize command line option
--parameters_file
glotaran-optimize command line option
glotaran-print command line option
glotaran-validate command line option
--version
glotaran command line option
--yes
glotaran-optimize command line option
-d
glotaran-optimize command line option
-dfmt
glotaran-optimize command line option
-m
glotaran-optimize command line option
glotaran-print command line option
glotaran-validate command line option
-n
glotaran-optimize command line option
-o
glotaran-optimize command line option
-ofmt
glotaran-optimize command line option
-p
glotaran-optimize command line option
glotaran-print command line option
glotaran-validate command line option
-y
glotaran-optimize command line option
A
a_matrix() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
a_matrix_as_markdown() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
a_matrix_general() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
a_matrix_sequential() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
add_data_row() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
add_group() (glotaran.parameter.parameter_group.ParameterGroup method)
add_instantiated_plugin_to_registry() (in module glotaran.plugin_system.base_registry)
add_parameter() (glotaran.parameter.parameter_group.ParameterGroup method)
add_plugin_to_registry() (in module glotaran.plugin_system.base_registry)
add_svd (glotaran.project.scheme.Scheme attribute)
add_svd_to_dataset() (in module glotaran.io.prepare_dataset)
add_type() (glotaran.builtin.megacomplexes.decay.irf.Irf class method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShape class method)
(glotaran.model.constraint.Constraint class method)
additional_penalty (glotaran.optimization.optimization_group.OptimizationGroup property)
(glotaran.project.result.Result attribute)
all() (glotaran.parameter.parameter_group.ParameterGroup method)
amplitude (glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian property)
append() (glotaran.parameter.parameter_history.ParameterHistory method)
applies() (glotaran.model.clp_penalties.EqualAreaPenalty method)
(glotaran.model.constraint.OnlyConstraint method)
(glotaran.model.constraint.ZeroConstraint method)
(glotaran.model.interval_property.IntervalProperty method)
(glotaran.model.relation.Relation method)
apply_constraints() (in module glotaran.optimization.util)
apply_relations() (in module glotaran.optimization.util)
apply_spectral_penalties() (in module glotaran.model.clp_penalties)
apply_weight() (in module glotaran.optimization.util)
arity (glotaran.cli.commands.util.ValOrRangeOrList attribute)
as_dict() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration method)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(glotaran.model.clp_penalties.EqualAreaPenalty method)
(glotaran.model.constraint.OnlyConstraint method)
(glotaran.model.constraint.ZeroConstraint method)
(glotaran.model.interval_property.IntervalProperty method)
(glotaran.model.model.Model method)
(glotaran.model.relation.Relation method)
(glotaran.model.weight.Weight method)
(glotaran.parameter.parameter.Parameter method)
AsciiDataIo (class in glotaran.builtin.io.ascii.wavelength_time_explicit_file)
asdict() (in module glotaran.project.dataclass_helpers)
axis (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModel attribute)
B
backsweep (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
backsweep_period (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
bag (glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked property)
BaselineMegacomplex (class in glotaran.builtin.megacomplexes.baseline.baseline_megacomplex)
bool_str_repr() (in module glotaran.plugin_system.io_plugin_utils)
bool_table_repr() (in module glotaran.plugin_system.io_plugin_utils)
C
calculate() (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero method)
calculate_clp_penalties() (in module glotaran.optimization.util)
calculate_damped_oscillation_matrix_gaussian_irf() (in module glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex)
calculate_damped_oscillation_matrix_no_irf() (in module glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex)
calculate_decay_matrix_gaussian_irf() (in module glotaran.builtin.megacomplexes.decay.util)
calculate_decay_matrix_no_irf() (in module glotaran.builtin.megacomplexes.decay.util)
calculate_dispersion() (glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
calculate_full_penalty() (glotaran.optimization.optimization_group_calculator.OptimizationGroupCalculator method)
(glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
(glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked method)
calculate_gamma() (in module glotaran.builtin.megacomplexes.decay.k_matrix)
calculate_index_dependent_matrices() (glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
calculate_index_independent_matrices() (glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
calculate_matrices() (glotaran.optimization.optimization_group_calculator.OptimizationGroupCalculator method)
(glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
(glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked method)
calculate_matrix() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(in module glotaran.builtin.megacomplexes.decay.util)
(in module glotaran.optimization.util)
calculate_residual() (glotaran.optimization.optimization_group_calculator.OptimizationGroupCalculator method)
(glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
(glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked method)
CalculatedMatrix (class in glotaran.optimization.util)
capitalize() (glotaran.utils.ipython.MarkdownStr method)
casefold() (glotaran.utils.ipython.MarkdownStr method)
center (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
center() (glotaran.utils.ipython.MarkdownStr method)
center_dispersion_coefficients (glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
check_overdue() (in module glotaran.deprecation.deprecation_utils)
check_qualnames_in_tests() (in module glotaran.deprecation.deprecation_utils)
chi_square (glotaran.project.result.Result attribute)
clear() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
clp_labels (glotaran.optimization.util.CalculatedMatrix attribute)
clp_link_tolerance (glotaran.project.scheme.Scheme attribute)
ClpGuideMegacomplex (class in glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex)
clps (glotaran.optimization.optimization_group.OptimizationGroup property)
CoherentArtifactMegacomplex (class in glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex)
collect_megacomplexes() (in module glotaran.builtin.megacomplexes.decay.util)
combine() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
combine_matrices() (in module glotaran.optimization.optimization_group_calculator_linked)
combine_matrix() (in module glotaran.optimization.util)
compartments (glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex property)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration property)
compartments() (glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
Constraint (class in glotaran.model.constraint)
convert() (glotaran.cli.commands.util.ValOrRangeOrList method)
convert_scientific_to_float() (in module glotaran.utils.sanitize)
copy() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
cost (glotaran.optimization.optimization_group.OptimizationGroup property)
(glotaran.project.result.Result attribute)
count() (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModel method)
(glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup method)
(glotaran.optimization.util.CalculatedMatrix method)
(glotaran.utils.ipython.MarkdownStr method)
covariance_matrix (glotaran.project.result.Result attribute)
create() (glotaran.project.project.Project static method)
create_clp_guide_dataset() (glotaran.project.result.Result method)
(in module glotaran.utils.io)
create_dataset_model_type() (in module glotaran.model.dataset_model)
create_default_list() (glotaran.parameter.parameter.Parameter static method)
create_index_dependent_result_dataset() (glotaran.optimization.optimization_group_calculator.OptimizationGroupCalculator method)
(glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
(glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked method)
create_index_independent_result_dataset() (glotaran.optimization.optimization_group_calculator.OptimizationGroupCalculator method)
(glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
(glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked method)
create_result_data() (glotaran.optimization.optimization_group.OptimizationGroup method)
create_result_dataset() (glotaran.optimization.optimization_group.OptimizationGroup method)
create_result_run_name() (glotaran.project.project_result_registry.ProjectResultRegistry method)
create_scheme() (glotaran.project.project.Project method)
CsvProjectIo (class in glotaran.builtin.io.pandas.csv)
D
DampedOscillationMegacomplex (class in glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex)
data (glotaran.optimization.optimization_group.OptimizationGroup property)
(glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup attribute)
(glotaran.project.project.Project property)
(glotaran.project.result.Result attribute)
(glotaran.project.scheme.Scheme attribute)
data_filter (glotaran.io.interface.SavingOptions attribute)
data_format (glotaran.io.interface.SavingOptions attribute)
data_io_plugin_table() (in module glotaran.plugin_system.data_io_registration)
data_sizes (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup attribute)
DataFileType (class in glotaran.builtin.io.ascii.wavelength_time_explicit_file)
DataIoInterface (class in glotaran.io.interface)
dataset() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
dataset_group_models (glotaran.model.model.Model property)
dataset_models (glotaran.model.dataset_group.DatasetGroup attribute)
(glotaran.optimization.optimization_group.OptimizationGroup property)
(glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup attribute)
DatasetGroup (class in glotaran.model.dataset_group)
DatasetGroupModel (class in glotaran.model.dataset_group)
DatasetIndexModel (class in glotaran.optimization.optimization_group_calculator_linked)
DatasetIndexModelGroup (class in glotaran.optimization.optimization_group_calculator_linked)
DatasetMapping (class in glotaran.utils.io)
DatasetModel (class in glotaran.model.dataset_model)
datasets (glotaran.model.weight.Weight property)
decay_matrix_implementation() (in module glotaran.builtin.megacomplexes.decay.util)
DecayMegacomplex (class in glotaran.builtin.megacomplexes.decay.decay_megacomplex)
DecayParallelMegacomplex (class in glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex)
DecaySequentialMegacomplex (class in glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex)
default_megacomplex (glotaran.model.model.Model property)
degrees_of_freedom (glotaran.project.result.Result attribute)
deleter() (glotaran.model.property.ModelProperty method)
deprecate() (in module glotaran.deprecation.deprecation_utils)
deprecate_dict_entry() (in module glotaran.deprecation.deprecation_utils)
deprecate_module_attribute() (in module glotaran.deprecation.deprecation_utils)
deprecate_submodule() (in module glotaran.deprecation.deprecation_utils)
dimension (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex property)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex property)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex property)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex property)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex property)
directory (glotaran.project.project_data_registry.ProjectDataRegistry property)
(glotaran.project.project_model_registry.ProjectModelRegistry property)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry property)
(glotaran.project.project_registry.ProjectRegistry property)
(glotaran.project.project_result_registry.ProjectResultRegistry property)
dispersion_center (glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
display_file() (in module glotaran.utils.ipython)
E
eigen() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
elements_in_string_of_list (glotaran.utils.regex.RegexPattern attribute)
empty (glotaran.project.project_data_registry.ProjectDataRegistry property)
(glotaran.project.project_model_registry.ProjectModelRegistry property)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry property)
(glotaran.project.project_registry.ProjectRegistry property)
(glotaran.project.project_result_registry.ProjectResultRegistry property)
empty() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix class method)
encode() (glotaran.utils.ipython.MarkdownStr method)
endswith() (glotaran.utils.ipython.MarkdownStr method)
ensure_exclusive_megacomplexes() (glotaran.model.dataset_model.DatasetModel method)
ensure_oscillation_parameter() (glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
ensure_unique_megacomplexes() (glotaran.model.dataset_model.DatasetModel method)
envvar_list_splitter (glotaran.cli.commands.util.ValOrRangeOrList attribute)
EqualAreaPenalty (class in glotaran.model.clp_penalties)
ExcelProjectIo (class in glotaran.builtin.io.pandas.xlsx)
exclude_from_dict_field() (in module glotaran.project.dataclass_helpers)
exclude_from_normalize (glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration property)
expandtabs() (glotaran.utils.ipython.MarkdownStr method)
ExplicitFile (class in glotaran.builtin.io.ascii.wavelength_time_explicit_file)
export() (in module glotaran.cli.commands.explore)
EXPR (glotaran.parameter.parameter.Keys attribute)
expression (glotaran.parameter.parameter.Parameter property)
F
fail() (glotaran.cli.commands.util.ValOrRangeOrList method)
fdel (glotaran.model.property.ModelProperty attribute)
fget (glotaran.model.property.ModelProperty attribute)
file (glotaran.project.project.Project attribute)
file_loadable_field() (in module glotaran.project.dataclass_helpers)
file_loader_factory() (in module glotaran.project.dataclass_helpers)
FileLoadableProtocol (class in glotaran.typing.protocols)
fill() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration method)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(glotaran.model.clp_penalties.EqualAreaPenalty method)
(glotaran.model.constraint.OnlyConstraint method)
(glotaran.model.constraint.ZeroConstraint method)
(glotaran.model.interval_property.IntervalProperty method)
(glotaran.model.relation.Relation method)
(glotaran.model.weight.Weight method)
finalize_data() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(glotaran.model.dataset_model.DatasetModel method)
(in module glotaran.builtin.megacomplexes.decay.util)
find() (glotaran.utils.ipython.MarkdownStr method)
find_closest_index() (in module glotaran.optimization.util)
find_overlap() (in module glotaran.optimization.util)
folder (glotaran.project.project.Project attribute)
FolderProjectIo (class in glotaran.builtin.io.folder.folder_plugin)
format() (glotaran.utils.ipython.MarkdownStr method)
format_map() (glotaran.utils.ipython.MarkdownStr method)
free_parameter_labels (glotaran.project.result.Result attribute)
frequencies (glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex property)
from_csv() (glotaran.parameter.parameter_history.ParameterHistory class method)
from_dataframe() (glotaran.parameter.parameter_group.ParameterGroup class method)
(glotaran.parameter.parameter_history.ParameterHistory class method)
from_dict() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex class method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex class method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex class method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration class method)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian class method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured class method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian class method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian class method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian class method)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix class method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian class method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne class method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian class method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero class method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex class method)
(glotaran.model.clp_penalties.EqualAreaPenalty class method)
(glotaran.model.constraint.OnlyConstraint class method)
(glotaran.model.constraint.ZeroConstraint class method)
(glotaran.model.interval_property.IntervalProperty class method)
(glotaran.model.model.Model class method)
(glotaran.model.relation.Relation class method)
(glotaran.model.weight.Weight class method)
(glotaran.parameter.parameter.Parameter class method)
(glotaran.parameter.parameter_group.ParameterGroup class method)
from_list() (glotaran.parameter.parameter_group.ParameterGroup class method)
from_list_or_value() (glotaran.parameter.parameter.Parameter class method)
from_parameter_dict_list() (glotaran.parameter.parameter_group.ParameterGroup class method)
fromdict() (in module glotaran.project.dataclass_helpers)
fromkeys() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
fset (glotaran.model.property.ModelProperty attribute)
ftol (glotaran.project.scheme.Scheme attribute)
full() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
full_label (glotaran.parameter.parameter.Parameter property)
full_penalty (glotaran.optimization.optimization_group.OptimizationGroup property)
full_plugin_name() (in module glotaran.plugin_system.base_registry)
G
generate_model() (glotaran.project.project.Project method)
(glotaran.project.project_model_registry.ProjectModelRegistry method)
(in module glotaran.project.generators.generator)
generate_model_yml() (in module glotaran.project.generators.generator)
generate_parallel_decay_model() (in module glotaran.project.generators.generator)
generate_parallel_spectral_decay_model() (in module glotaran.project.generators.generator)
generate_parameters() (glotaran.model.model.Model method)
(glotaran.project.project.Project method)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry method)
generate_sequential_decay_model() (in module glotaran.project.generators.generator)
generate_sequential_spectral_decay_model() (in module glotaran.project.generators.generator)
GeneratorArguments (class in glotaran.project.generators.generator)
get() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
get_a_matrix() (glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
get_compartments() (glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
get_coordinates() (glotaran.model.dataset_model.DatasetModel method)
get_data() (glotaran.model.dataset_model.DatasetModel method)
get_data_file_format() (in module glotaran.builtin.io.ascii.wavelength_time_explicit_file)
get_data_io() (in module glotaran.plugin_system.data_io_registration)
get_data_row() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_dataloader() (in module glotaran.plugin_system.data_io_registration)
get_datasaver() (in module glotaran.plugin_system.data_io_registration)
get_dataset_groups() (glotaran.model.model.Model method)
get_default_type() (glotaran.builtin.megacomplexes.decay.irf.Irf class method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShape class method)
(glotaran.model.constraint.Constraint class method)
get_explicit_axis() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_format_name() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_global_axis() (glotaran.model.dataset_model.DatasetModel method)
get_global_dimension() (glotaran.model.dataset_model.DatasetModel method)
get_group_for_parameter_by_label() (glotaran.parameter.parameter_group.ParameterGroup method)
get_idx_from_interval() (in module glotaran.optimization.util)
get_initial_concentration() (glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
get_interval_number() (in module glotaran.builtin.io.ascii.wavelength_time_explicit_file)
get_k_matrix() (glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
get_label_value_and_bounds_arrays() (glotaran.parameter.parameter_group.ParameterGroup method)
get_latest_result_path() (glotaran.project.project.Project method)
get_megacomplex() (in module glotaran.plugin_system.megacomplex_registration)
get_metavar() (glotaran.cli.commands.util.ValOrRangeOrList method)
get_method_from_plugin() (in module glotaran.plugin_system.base_registry)
get_min_max_from_interval() (in module glotaran.optimization.util)
get_missing_message() (glotaran.cli.commands.util.ValOrRangeOrList method)
get_model_axis() (glotaran.model.dataset_model.DatasetModel method)
get_model_dimension() (glotaran.model.dataset_model.DatasetModel method)
get_models_directory() (glotaran.project.project.Project method)
get_nr_roots() (glotaran.parameter.parameter_group.ParameterGroup method)
get_observations() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_parameter_labels() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration method)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(glotaran.model.clp_penalties.EqualAreaPenalty method)
(glotaran.model.constraint.OnlyConstraint method)
(glotaran.model.constraint.ZeroConstraint method)
(glotaran.model.interval_property.IntervalProperty method)
(glotaran.model.model.Model method)
(glotaran.model.relation.Relation method)
(glotaran.model.weight.Weight method)
get_parameters() (glotaran.parameter.parameter_history.ParameterHistory method)
get_parameters_directory() (glotaran.project.project.Project method)
get_plugin_from_registry() (in module glotaran.plugin_system.base_registry)
get_project_io() (in module glotaran.plugin_system.project_io_registration)
get_project_io_method() (in module glotaran.plugin_system.project_io_registration)
get_result_path() (glotaran.project.project.Project method)
get_scheme() (glotaran.project.result.Result method)
get_script_dir() (in module glotaran.utils.io)
get_secondary_axis() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_subtype() (in module glotaran.model.util)
get_value_and_bounds_for_optimization() (glotaran.parameter.parameter.Parameter method)
get_weight() (glotaran.model.dataset_model.DatasetModel method)
getter() (glotaran.model.property.ModelProperty method)
global_dimension (glotaran.model.model.Model property)
global_dimensions (glotaran.project.scheme.Scheme property)
global_interval (glotaran.model.weight.Weight property)
global_matrices (glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked property)
global_megacomplex (glotaran.model.model.Model property)
glotaran
module
glotaran command line option
--version
glotaran-optimize command line option
--data
--dataformat
--model_file
--nfev
--nnls
--out
--outformat
--parameters_file
--yes
-d
-dfmt
-m
-n
-o
-ofmt
-p
-y
SCHEME_FILE
glotaran-print command line option
--model_file
--parameters_file
-m
-p
SCHEME_FILE
glotaran-validate command line option
--model_file
--parameters_file
-m
-p
SCHEME_FILE
glotaran.analysis
module
glotaran.builtin
module
glotaran.builtin.io
module
glotaran.builtin.io.ascii
module
glotaran.builtin.io.ascii.wavelength_time_explicit_file
module
glotaran.builtin.io.folder
module
glotaran.builtin.io.folder.folder_plugin
module
glotaran.builtin.io.netCDF
module
glotaran.builtin.io.netCDF.netCDF
module
glotaran.builtin.io.pandas
module
glotaran.builtin.io.pandas.csv
module
glotaran.builtin.io.pandas.tsv
module
glotaran.builtin.io.pandas.xlsx
module
glotaran.builtin.io.sdt
module
glotaran.builtin.io.sdt.sdt_file_reader
module
glotaran.builtin.io.yml
module
glotaran.builtin.io.yml.utils
module
glotaran.builtin.io.yml.yml
module
glotaran.builtin.megacomplexes
module
glotaran.builtin.megacomplexes.baseline
module
glotaran.builtin.megacomplexes.baseline.baseline_megacomplex
module
glotaran.builtin.megacomplexes.clp_guide
module
glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex
module
glotaran.builtin.megacomplexes.coherent_artifact
module
glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex
module
glotaran.builtin.megacomplexes.damped_oscillation
module
glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex
module
glotaran.builtin.megacomplexes.decay
module
glotaran.builtin.megacomplexes.decay.decay_megacomplex
module
glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex
module
glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex
module
glotaran.builtin.megacomplexes.decay.initial_concentration
module
glotaran.builtin.megacomplexes.decay.irf
module
glotaran.builtin.megacomplexes.decay.k_matrix
module
glotaran.builtin.megacomplexes.decay.util
module
glotaran.builtin.megacomplexes.spectral
module
glotaran.builtin.megacomplexes.spectral.shape
module
glotaran.builtin.megacomplexes.spectral.spectral_megacomplex
module
glotaran.cli
module
glotaran.cli.commands
module
glotaran.cli.commands.explore
module
glotaran.cli.commands.export
module
glotaran.cli.commands.optimize
module
glotaran.cli.commands.pluginlist
module
glotaran.cli.commands.print
module
glotaran.cli.commands.util
module
glotaran.cli.commands.validate
module
glotaran.deprecation
module
glotaran.deprecation.deprecation_utils
module
glotaran.deprecation.modules
module
glotaran.deprecation.modules.builtin_io_yml
module
glotaran.deprecation.modules.examples
module
glotaran.deprecation.modules.examples.sequential
module
glotaran.io
module
glotaran.io.interface
module
glotaran.io.prepare_dataset
module
glotaran.model
module
glotaran.model.clp_penalties
module
glotaran.model.constraint
module
glotaran.model.dataset_group
module
glotaran.model.dataset_model
module
glotaran.model.interval_property
module
glotaran.model.item
module
glotaran.model.model
module
glotaran.model.property
module
glotaran.model.relation
module
glotaran.model.util
module
glotaran.model.weight
module
glotaran.optimization
module
glotaran.optimization.nnls
module
glotaran.optimization.optimization_group
module
glotaran.optimization.optimization_group_calculator
module
glotaran.optimization.optimization_group_calculator_linked
module
glotaran.optimization.optimization_group_calculator_unlinked
module
glotaran.optimization.optimize
module
glotaran.optimization.util
module
glotaran.optimization.variable_projection
module
glotaran.parameter
module
glotaran.parameter.parameter
module
glotaran.parameter.parameter_group
module
glotaran.parameter.parameter_history
module
glotaran.plugin_system
module
glotaran.plugin_system.base_registry
module
glotaran.plugin_system.data_io_registration
module
glotaran.plugin_system.io_plugin_utils
module
glotaran.plugin_system.megacomplex_registration
module
glotaran.plugin_system.project_io_registration
module
glotaran.project
module
glotaran.project.dataclass_helpers
module
glotaran.project.generators
module
glotaran.project.generators.generator
module
glotaran.project.project
module
glotaran.project.project_data_registry
module
glotaran.project.project_model_registry
module
glotaran.project.project_parameter_registry
module
glotaran.project.project_registry
module
glotaran.project.project_result_registry
module
glotaran.project.result
module
glotaran.project.scheme
module
glotaran.simulation
module
glotaran.simulation.simulation
module
glotaran.testing
module
glotaran.testing.plugin_system
module
glotaran.testing.simulated_data
module
glotaran.testing.simulated_data.parallel_spectral_decay
module
glotaran.testing.simulated_data.sequential_spectral_decay
module
glotaran.testing.simulated_data.shared_decay
module
glotaran.typing
module
glotaran.typing.protocols
module
glotaran.typing.types
module
glotaran.utils
module
glotaran.utils.io
module
glotaran.utils.ipython
module
glotaran.utils.regex
module
glotaran.utils.sanitize
module
glotaran_allow_none (glotaran.model.property.ModelProperty property)
glotaran_dataset_model_items() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex class method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex class method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex class method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex class method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex class method)
glotaran_dataset_properties() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex class method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex class method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex class method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex class method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex class method)
glotaran_exclusive() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex class method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex class method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex class method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex class method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex class method)
glotaran_fill() (glotaran.model.property.ModelProperty method)
glotaran_format_value() (glotaran.model.property.ModelProperty method)
glotaran_get_parameter_labels() (glotaran.model.property.ModelProperty method)
glotaran_is_mapping_property (glotaran.model.property.ModelProperty property)
glotaran_is_parameter_property (glotaran.model.property.ModelProperty property)
glotaran_is_scalar_property (glotaran.model.property.ModelProperty property)
glotaran_is_sequence_property (glotaran.model.property.ModelProperty property)
glotaran_model_items() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex class method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex class method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex class method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex class method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex class method)
glotaran_property_subtype (glotaran.model.property.ModelProperty property)
glotaran_property_type (glotaran.model.property.ModelProperty property)
glotaran_replace_parameter_with_labels() (glotaran.model.property.ModelProperty method)
glotaran_unique() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex class method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex class method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex class method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex class method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex class method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex class method)
glotaran_validate() (glotaran.model.property.ModelProperty method)
glotaran_value_as_markdown() (glotaran.model.property.ModelProperty method)
glotaran_version (glotaran.project.result.Result attribute)
glotaran_version() (in module glotaran.deprecation.deprecation_utils)
group (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup attribute)
(glotaran.project.scheme.Scheme attribute)
(glotaran.utils.regex.RegexPattern attribute)
group_tolerance (glotaran.project.scheme.Scheme attribute)
groups (glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked property)
groups() (glotaran.parameter.parameter_group.ParameterGroup method)
gtol (glotaran.project.scheme.Scheme attribute)
H
has() (glotaran.parameter.parameter_group.ParameterGroup method)
has_data (glotaran.project.project.Project property)
has_global_model() (glotaran.model.dataset_model.DatasetModel method)
has_models (glotaran.project.project.Project property)
has_parameters (glotaran.project.project.Project property)
has_results (glotaran.project.project.Project property)
has_scaling (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup attribute)
has_spectral_penalties() (in module glotaran.model.clp_penalties)
I
import_data() (glotaran.project.project.Project method)
(glotaran.project.project_data_registry.ProjectDataRegistry method)
index() (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModel method)
(glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup method)
(glotaran.optimization.util.CalculatedMatrix method)
(glotaran.utils.ipython.MarkdownStr method)
index_dependent() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(in module glotaran.builtin.megacomplexes.decay.util)
indices (glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModel attribute)
inferr_file_format() (in module glotaran.plugin_system.io_plugin_utils)
init_bag() (glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
init_file_loadable_fields() (in module glotaran.project.dataclass_helpers)
initial_parameters (glotaran.project.result.Result attribute)
InitialConcentration (class in glotaran.builtin.megacomplexes.decay.initial_concentration)
interval (glotaran.model.constraint.OnlyConstraint property)
(glotaran.model.constraint.ZeroConstraint property)
(glotaran.model.interval_property.IntervalProperty property)
(glotaran.model.relation.Relation property)
IntervalProperty (class in glotaran.model.interval_property)
involved_compartments() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
Irf (class in glotaran.builtin.megacomplexes.decay.irf)
irf (glotaran.project.generators.generator.GeneratorArguments attribute)
IrfGaussian (class in glotaran.builtin.megacomplexes.decay.irf)
IrfMeasured (class in glotaran.builtin.megacomplexes.decay.irf)
IrfMultiGaussian (class in glotaran.builtin.megacomplexes.decay.irf)
IrfSpectralGaussian (class in glotaran.builtin.megacomplexes.decay.irf)
IrfSpectralMultiGaussian (class in glotaran.builtin.megacomplexes.decay.irf)
is_composite (glotaran.cli.commands.util.ValOrRangeOrList attribute)
is_groupable() (glotaran.model.model.Model method)
is_index_dependent() (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.model.dataset_model.DatasetModel method)
is_item() (glotaran.project.project_data_registry.ProjectDataRegistry method)
(glotaran.project.project_model_registry.ProjectModelRegistry method)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry method)
(glotaran.project.project_registry.ProjectRegistry method)
(glotaran.project.project_result_registry.ProjectResultRegistry method)
is_known_data_format() (in module glotaran.plugin_system.data_io_registration)
is_known_megacomplex() (in module glotaran.plugin_system.megacomplex_registration)
is_known_project_format() (in module glotaran.plugin_system.project_io_registration)
is_mapping_type() (in module glotaran.model.util)
is_registered_plugin() (in module glotaran.plugin_system.base_registry)
is_scalar_type() (in module glotaran.model.util)
is_sequence_type() (in module glotaran.model.util)
is_sequential() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
isalnum() (glotaran.utils.ipython.MarkdownStr method)
isalpha() (glotaran.utils.ipython.MarkdownStr method)
isascii() (glotaran.utils.ipython.MarkdownStr method)
isdecimal() (glotaran.utils.ipython.MarkdownStr method)
isdigit() (glotaran.utils.ipython.MarkdownStr method)
isidentifier() (glotaran.utils.ipython.MarkdownStr method)
islower() (glotaran.utils.ipython.MarkdownStr method)
isnumeric() (glotaran.utils.ipython.MarkdownStr method)
isprintable() (glotaran.utils.ipython.MarkdownStr method)
isspace() (glotaran.utils.ipython.MarkdownStr method)
istitle() (glotaran.utils.ipython.MarkdownStr method)
isupper() (glotaran.utils.ipython.MarkdownStr method)
items (glotaran.project.project_data_registry.ProjectDataRegistry property)
(glotaran.project.project_model_registry.ProjectModelRegistry property)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry property)
(glotaran.project.project_registry.ProjectRegistry property)
(glotaran.project.project_result_registry.ProjectResultRegistry property)
items() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
iterate_global_megacomplexes() (glotaran.model.dataset_model.DatasetModel method)
iterate_megacomplexes() (glotaran.model.dataset_model.DatasetModel method)
J
jacobian (glotaran.project.result.Result attribute)
join() (glotaran.utils.ipython.MarkdownStr method)
K
k_matrix (glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex property)
Keys (class in glotaran.parameter.parameter)
keys() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
KMatrix (class in glotaran.builtin.megacomplexes.decay.k_matrix)
known_data_formats() (in module glotaran.plugin_system.data_io_registration)
known_megacomplex_names() (in module glotaran.plugin_system.megacomplex_registration)
known_project_formats() (in module glotaran.plugin_system.project_io_registration)
L
label (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex property)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex property)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex property)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex property)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration property)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero property)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex property)
(glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModel attribute)
(glotaran.parameter.parameter.Parameter property)
(glotaran.parameter.parameter_group.ParameterGroup property)
labels (glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex property)
LegacyProjectIo (class in glotaran.builtin.io.folder.folder_plugin)
link_clp (glotaran.model.dataset_group.DatasetGroupModel attribute)
list_string_to_tuple() (in module glotaran.utils.sanitize)
list_with_tuples (glotaran.utils.regex.RegexPattern attribute)
ljust() (glotaran.utils.ipython.MarkdownStr method)
load_data() (glotaran.project.project.Project method)
load_dataset() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.AsciiDataIo method)
(glotaran.builtin.io.netCDF.netCDF.NetCDFDataIo method)
(glotaran.builtin.io.sdt.sdt_file_reader.SdtDataIo method)
(glotaran.io.interface.DataIoInterface method)
(in module glotaran.plugin_system.data_io_registration)
load_dataset_file() (in module glotaran.cli.commands.util)
load_datasets() (in module glotaran.utils.io)
load_dict() (in module glotaran.builtin.io.yml.utils)
load_item() (glotaran.project.project_data_registry.ProjectDataRegistry method)
(glotaran.project.project_model_registry.ProjectModelRegistry method)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry method)
(glotaran.project.project_registry.ProjectRegistry method)
(glotaran.project.project_result_registry.ProjectResultRegistry method)
load_latest_result() (glotaran.project.project.Project method)
load_model() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(glotaran.project.project.Project method)
(in module glotaran.plugin_system.project_io_registration)
load_model_file() (in module glotaran.cli.commands.util)
load_parameter_file() (in module glotaran.cli.commands.util)
load_parameters() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(glotaran.project.project.Project method)
(in module glotaran.plugin_system.project_io_registration)
load_plugins() (in module glotaran.plugin_system.base_registry)
load_result() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(glotaran.project.project.Project method)
(in module glotaran.plugin_system.project_io_registration)
load_scheme() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(in module glotaran.plugin_system.project_io_registration)
load_scheme_file() (in module glotaran.cli.commands.util)
loader (glotaran.typing.protocols.FileLoadableProtocol attribute)
loader() (glotaran.model.model.Model method)
(glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.parameter.parameter_history.ParameterHistory class method)
(glotaran.project.result.Result method)
(glotaran.project.scheme.Scheme method)
(glotaran.utils.io.DatasetMapping class method)
location (glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian property)
lower() (glotaran.utils.ipython.MarkdownStr method)
lstrip() (glotaran.utils.ipython.MarkdownStr method)
M
main (in module glotaran.cli)
make_path_absolute_if_relative() (in module glotaran.utils.io)
maketrans() (glotaran.utils.ipython.MarkdownStr method)
markdown() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration method)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(glotaran.model.clp_penalties.EqualAreaPenalty method)
(glotaran.model.constraint.OnlyConstraint method)
(glotaran.model.constraint.ZeroConstraint method)
(glotaran.model.interval_property.IntervalProperty method)
(glotaran.model.model.Model method)
(glotaran.model.relation.Relation method)
(glotaran.model.weight.Weight method)
(glotaran.parameter.parameter.Parameter method)
(glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.project.Project method)
(glotaran.project.project_data_registry.ProjectDataRegistry method)
(glotaran.project.project_model_registry.ProjectModelRegistry method)
(glotaran.project.project_parameter_registry.ProjectParameterRegistry method)
(glotaran.project.project_registry.ProjectRegistry method)
(glotaran.project.project_result_registry.ProjectResultRegistry method)
(glotaran.project.result.Result method)
(glotaran.project.scheme.Scheme method)
MarkdownStr (class in glotaran.utils.ipython)
matrices (glotaran.optimization.optimization_group.OptimizationGroup property)
matrix (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix property)
(glotaran.optimization.util.CalculatedMatrix attribute)
matrix_as_markdown() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
MAX (glotaran.parameter.parameter.Keys attribute)
maximum (glotaran.parameter.parameter.Parameter property)
maximum_number_function_evaluations (glotaran.project.scheme.Scheme attribute)
megacomplex() (in module glotaran.model)
megacomplex_plugin_table() (in module glotaran.plugin_system.megacomplex_registration)
megacomplex_types (glotaran.model.model.Model property)
methods_differ_from_baseclass() (in module glotaran.plugin_system.base_registry)
methods_differ_from_baseclass_table() (in module glotaran.plugin_system.base_registry)
MIN (glotaran.parameter.parameter.Keys attribute)
minimum (glotaran.parameter.parameter.Parameter property)
missing_parameter_value_labels (glotaran.parameter.parameter_group.ParameterGroup property)
Model (class in glotaran.model.model)
model (glotaran.model.dataset_group.DatasetGroup attribute)
(glotaran.optimization.optimization_group.OptimizationGroup property)
(glotaran.project.result.Result property)
(glotaran.project.scheme.Scheme attribute)
model_dimension (glotaran.model.model.Model property)
model_dimensions (glotaran.project.scheme.Scheme property)
model_dispersion_with_wavenumber (glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
model_interval (glotaran.model.weight.Weight property)
model_item() (in module glotaran.model.item)
model_item_typed() (in module glotaran.model.item)
model_item_validator() (in module glotaran.model.item)
model_items (glotaran.model.model.Model property)
model_spec_deprecations() (in module glotaran.deprecation.modules.builtin_io_yml)
ModelProperty (class in glotaran.model.property)
models (glotaran.project.project.Project property)
module
glotaran
glotaran.analysis
glotaran.builtin
glotaran.builtin.io
glotaran.builtin.io.ascii
glotaran.builtin.io.ascii.wavelength_time_explicit_file
glotaran.builtin.io.folder
glotaran.builtin.io.folder.folder_plugin
glotaran.builtin.io.netCDF
glotaran.builtin.io.netCDF.netCDF
glotaran.builtin.io.pandas
glotaran.builtin.io.pandas.csv
glotaran.builtin.io.pandas.tsv
glotaran.builtin.io.pandas.xlsx
glotaran.builtin.io.sdt
glotaran.builtin.io.sdt.sdt_file_reader
glotaran.builtin.io.yml
glotaran.builtin.io.yml.utils
glotaran.builtin.io.yml.yml
glotaran.builtin.megacomplexes
glotaran.builtin.megacomplexes.baseline
glotaran.builtin.megacomplexes.baseline.baseline_megacomplex
glotaran.builtin.megacomplexes.clp_guide
glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex
glotaran.builtin.megacomplexes.coherent_artifact
glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex
glotaran.builtin.megacomplexes.damped_oscillation
glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex
glotaran.builtin.megacomplexes.decay
glotaran.builtin.megacomplexes.decay.decay_megacomplex
glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex
glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex
glotaran.builtin.megacomplexes.decay.initial_concentration
glotaran.builtin.megacomplexes.decay.irf
glotaran.builtin.megacomplexes.decay.k_matrix
glotaran.builtin.megacomplexes.decay.util
glotaran.builtin.megacomplexes.spectral
glotaran.builtin.megacomplexes.spectral.shape
glotaran.builtin.megacomplexes.spectral.spectral_megacomplex
glotaran.cli
glotaran.cli.commands
glotaran.cli.commands.explore
glotaran.cli.commands.export
glotaran.cli.commands.optimize
glotaran.cli.commands.pluginlist
glotaran.cli.commands.print
glotaran.cli.commands.util
glotaran.cli.commands.validate
glotaran.deprecation
glotaran.deprecation.deprecation_utils
glotaran.deprecation.modules
glotaran.deprecation.modules.builtin_io_yml
glotaran.deprecation.modules.examples
glotaran.deprecation.modules.examples.sequential
glotaran.io
glotaran.io.interface
glotaran.io.prepare_dataset
glotaran.model
glotaran.model.clp_penalties
glotaran.model.constraint
glotaran.model.dataset_group
glotaran.model.dataset_model
glotaran.model.interval_property
glotaran.model.item
glotaran.model.model
glotaran.model.property
glotaran.model.relation
glotaran.model.util
glotaran.model.weight
glotaran.optimization
glotaran.optimization.nnls
glotaran.optimization.optimization_group
glotaran.optimization.optimization_group_calculator
glotaran.optimization.optimization_group_calculator_linked
glotaran.optimization.optimization_group_calculator_unlinked
glotaran.optimization.optimize
glotaran.optimization.util
glotaran.optimization.variable_projection
glotaran.parameter
glotaran.parameter.parameter
glotaran.parameter.parameter_group
glotaran.parameter.parameter_history
glotaran.plugin_system
glotaran.plugin_system.base_registry
glotaran.plugin_system.data_io_registration
glotaran.plugin_system.io_plugin_utils
glotaran.plugin_system.megacomplex_registration
glotaran.plugin_system.project_io_registration
glotaran.project
glotaran.project.dataclass_helpers
glotaran.project.generators
glotaran.project.generators.generator
glotaran.project.project
glotaran.project.project_data_registry
glotaran.project.project_model_registry
glotaran.project.project_parameter_registry
glotaran.project.project_registry
glotaran.project.project_result_registry
glotaran.project.result
glotaran.project.scheme
glotaran.simulation
glotaran.simulation.simulation
glotaran.testing
glotaran.testing.plugin_system
glotaran.testing.simulated_data
glotaran.testing.simulated_data.parallel_spectral_decay
glotaran.testing.simulated_data.sequential_spectral_decay
glotaran.testing.simulated_data.shared_decay
glotaran.typing
glotaran.typing.protocols
glotaran.typing.types
glotaran.utils
glotaran.utils.io
glotaran.utils.ipython
glotaran.utils.regex
glotaran.utils.sanitize
module_attribute() (in module glotaran.deprecation.deprecation_utils)
monkeypatch_plugin_registry() (in module glotaran.testing.plugin_system)
monkeypatch_plugin_registry_data_io() (in module glotaran.testing.plugin_system)
monkeypatch_plugin_registry_megacomplex() (in module glotaran.testing.plugin_system)
monkeypatch_plugin_registry_project_io() (in module glotaran.testing.plugin_system)
N
name (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex attribute)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex attribute)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex attribute)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex attribute)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex attribute)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex attribute)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex attribute)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex attribute)
(glotaran.cli.commands.util.ValOrRangeOrList attribute)
need_index_dependent() (glotaran.model.model.Model method)
NetCDFDataIo (class in glotaran.builtin.io.netCDF.netCDF)
NON_NEG (glotaran.parameter.parameter.Keys attribute)
non_negative (glotaran.parameter.parameter.Parameter property)
non_negative_least_squares (glotaran.project.scheme.Scheme attribute)
normalize (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
normalized() (glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration method)
not_implemented_to_value_error() (in module glotaran.plugin_system.io_plugin_utils)
nr_compartments (glotaran.project.generators.generator.GeneratorArguments attribute)
number (glotaran.utils.regex.RegexPattern attribute)
number_of_data_points (glotaran.project.result.Result attribute)
number_of_function_evaluations (glotaran.project.result.Result attribute)
number_of_jacobian_evaluations (glotaran.project.result.Result attribute)
number_of_parameters (glotaran.project.result.Result attribute)
number_of_records (glotaran.parameter.parameter_history.ParameterHistory property)
number_scientific (glotaran.utils.regex.RegexPattern attribute)
O
OnlyConstraint (class in glotaran.model.constraint)
open() (glotaran.project.project.Project class method)
optimality (glotaran.project.result.Result attribute)
optimization_method (glotaran.project.scheme.Scheme attribute)
OptimizationGroup (class in glotaran.optimization.optimization_group)
OptimizationGroupCalculator (class in glotaran.optimization.optimization_group_calculator)
OptimizationGroupCalculatorLinked (class in glotaran.optimization.optimization_group_calculator_linked)
OptimizationGroupCalculatorUnlinked (class in glotaran.optimization.optimization_group_calculator_unlinked)
optimize() (glotaran.project.project.Project method)
(in module glotaran.optimization.optimize)
optimize_cmd() (in module glotaran.cli.commands.optimize)
optimized_parameters (glotaran.project.result.Result attribute)
order (glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex property)
overwrite_global_dimension() (glotaran.model.dataset_model.DatasetModel method)
overwrite_index_dependent() (glotaran.model.dataset_model.DatasetModel method)
overwrite_model_dimension() (glotaran.model.dataset_model.DatasetModel method)
P
Parameter (class in glotaran.parameter.parameter)
parameter (glotaran.model.clp_penalties.EqualAreaPenalty property)
(glotaran.model.relation.Relation property)
parameter() (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
parameter_format (glotaran.io.interface.SavingOptions attribute)
parameter_history (glotaran.project.result.Result attribute)
parameter_labels (glotaran.parameter.parameter_history.ParameterHistory property)
ParameterGroup (class in glotaran.parameter.parameter_group)
ParameterHistory (class in glotaran.parameter.parameter_history)
parameters (glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration property)
(glotaran.optimization.optimization_group.OptimizationGroup property)
(glotaran.parameter.parameter_history.ParameterHistory property)
(glotaran.project.project.Project property)
(glotaran.project.scheme.Scheme attribute)
parse_version() (in module glotaran.deprecation.deprecation_utils)
partition() (glotaran.utils.ipython.MarkdownStr method)
plugin_list_cmd() (in module glotaran.cli.commands.pluginlist)
pop() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
popitem() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
prepare_result_creation() (glotaran.optimization.optimization_group_calculator.OptimizationGroupCalculator method)
(glotaran.optimization.optimization_group_calculator_linked.OptimizationGroupCalculatorLinked method)
(glotaran.optimization.optimization_group_calculator_unlinked.OptimizationGroupCalculatorUnlinked method)
prepare_time_trace_dataset() (in module glotaran.io.prepare_dataset)
pretty_format_numerical() (in module glotaran.utils.sanitize)
previous_result_paths() (glotaran.project.project_result_registry.ProjectResultRegistry method)
print_cmd() (in module glotaran.cli.commands.print)
problem_list() (glotaran.model.model.Model method)
(glotaran.project.scheme.Scheme method)
Project (class in glotaran.project.project)
project_io_list_supporting_plugins() (in module glotaran.cli.commands.util)
project_io_plugin_table() (in module glotaran.plugin_system.project_io_registration)
ProjectDataRegistry (class in glotaran.project.project_data_registry)
ProjectIoInterface (class in glotaran.io.interface)
ProjectModelRegistry (class in glotaran.project.project_model_registry)
ProjectParameterRegistry (class in glotaran.project.project_parameter_registry)
ProjectRegistry (class in glotaran.project.project_registry)
ProjectResultRegistry (class in glotaran.project.project_result_registry)
protect_from_overwrite() (in module glotaran.plugin_system.io_plugin_utils)
R
raise_deprecation_error() (in module glotaran.deprecation.deprecation_utils)
rates (glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex property)
rates() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
read() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
recreate() (glotaran.project.result.Result method)
reduce_matrix() (in module glotaran.optimization.util)
reduced() (glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
reduced_chi_square (glotaran.project.result.Result attribute)
reduced_clps (glotaran.optimization.optimization_group.OptimizationGroup property)
reduced_matrices (glotaran.optimization.optimization_group.OptimizationGroup property)
RegexPattern (class in glotaran.utils.regex)
register_data_io() (in module glotaran.plugin_system.data_io_registration)
register_megacomplex() (in module glotaran.plugin_system.megacomplex_registration)
register_project_io() (in module glotaran.plugin_system.project_io_registration)
registered_plugins() (in module glotaran.plugin_system.base_registry)
Relation (class in glotaran.model.relation)
relative_posix_path() (in module glotaran.utils.io)
replace() (glotaran.utils.ipython.MarkdownStr method)
report (glotaran.io.interface.SavingOptions attribute)
reset() (glotaran.optimization.optimization_group.OptimizationGroup method)
residual_function (glotaran.model.dataset_group.DatasetGroupModel attribute)
residual_nnls() (in module glotaran.optimization.nnls)
residual_variable_projection() (in module glotaran.optimization.variable_projection)
residuals (glotaran.optimization.optimization_group.OptimizationGroup property)
Result (class in glotaran.project.result)
result_path (glotaran.project.scheme.Scheme attribute)
result_pattern (glotaran.project.project_result_registry.ProjectResultRegistry attribute)
results (glotaran.project.project.Project property)
retrieve_clps() (in module glotaran.optimization.util)
retrieve_decay_associated_data() (in module glotaran.builtin.megacomplexes.decay.util)
retrieve_initial_concentration() (in module glotaran.builtin.megacomplexes.decay.util)
retrieve_irf() (in module glotaran.builtin.megacomplexes.decay.util)
retrieve_species_associated_data() (in module glotaran.builtin.megacomplexes.decay.util)
rfind() (glotaran.utils.ipython.MarkdownStr method)
rindex() (glotaran.utils.ipython.MarkdownStr method)
rjust() (glotaran.utils.ipython.MarkdownStr method)
root_group (glotaran.parameter.parameter_group.ParameterGroup property)
root_mean_square_error (glotaran.project.result.Result attribute)
rpartition() (glotaran.utils.ipython.MarkdownStr method)
rsplit() (glotaran.utils.ipython.MarkdownStr method)
rstrip() (glotaran.utils.ipython.MarkdownStr method)
S
safe_dataframe_fillna() (in module glotaran.utils.io)
safe_dataframe_replace() (in module glotaran.utils.io)
sanitize_dict_keys() (in module glotaran.utils.sanitize)
sanitize_dict_values() (in module glotaran.utils.sanitize)
sanitize_list_with_broken_tuples() (in module glotaran.utils.sanitize)
sanitize_parameter_list() (in module glotaran.utils.sanitize)
sanitize_yaml() (in module glotaran.utils.sanitize)
sanity_scientific_notation_conversion() (in module glotaran.utils.sanitize)
save() (glotaran.project.project_result_registry.ProjectResultRegistry method)
(glotaran.project.result.Result method)
save_dataset() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.AsciiDataIo method)
(glotaran.builtin.io.netCDF.netCDF.NetCDFDataIo method)
(glotaran.builtin.io.sdt.sdt_file_reader.SdtDataIo method)
(glotaran.io.interface.DataIoInterface method)
(in module glotaran.plugin_system.data_io_registration)
save_model() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(in module glotaran.plugin_system.project_io_registration)
save_parameters() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(in module glotaran.plugin_system.project_io_registration)
save_result() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(in module glotaran.plugin_system.project_io_registration)
save_scheme() (glotaran.builtin.io.folder.folder_plugin.FolderProjectIo method)
(glotaran.builtin.io.folder.folder_plugin.LegacyProjectIo method)
(glotaran.builtin.io.pandas.csv.CsvProjectIo method)
(glotaran.builtin.io.pandas.tsv.TsvProjectIo method)
(glotaran.builtin.io.pandas.xlsx.ExcelProjectIo method)
(glotaran.builtin.io.yml.yml.YmlProjectIo method)
(glotaran.io.interface.ProjectIoInterface method)
(in module glotaran.plugin_system.project_io_registration)
SavingOptions (class in glotaran.io.interface)
scale (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
Scheme (class in glotaran.project.scheme)
scheme (glotaran.project.result.Result attribute)
SCHEME_FILE
glotaran-optimize command line option
glotaran-print command line option
glotaran-validate command line option
scheme_spec_deprecations() (in module glotaran.deprecation.modules.builtin_io_yml)
SdtDataIo (class in glotaran.builtin.io.sdt.sdt_file_reader)
select_data() (in module glotaran.cli.commands.util)
select_name() (in module glotaran.cli.commands.util)
set_coordinates() (glotaran.model.dataset_model.DatasetModel method)
set_data() (glotaran.model.dataset_model.DatasetModel method)
set_data_plugin() (in module glotaran.plugin_system.data_io_registration)
set_explicit_axis() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
set_from_group() (glotaran.parameter.parameter.Parameter method)
set_from_history() (glotaran.parameter.parameter_group.ParameterGroup method)
set_from_label_and_value_arrays() (glotaran.parameter.parameter_group.ParameterGroup method)
set_megacomplex_plugin() (in module glotaran.plugin_system.megacomplex_registration)
set_plugin() (in module glotaran.plugin_system.base_registry)
set_project_plugin() (in module glotaran.plugin_system.project_io_registration)
set_value_from_optimization() (glotaran.parameter.parameter.Parameter method)
setdefault() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
setter() (glotaran.model.property.ModelProperty method)
shape (glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex property)
shell_complete() (glotaran.cli.commands.util.ValOrRangeOrList method)
shift (glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
show_data_io_method_help() (in module glotaran.plugin_system.data_io_registration)
show_method_help() (in module glotaran.plugin_system.base_registry)
show_project_io_method_help() (in module glotaran.plugin_system.project_io_registration)
signature_analysis() (in module glotaran.cli.commands.util)
simulate() (in module glotaran.simulation.simulation)
simulate_from_clp() (in module glotaran.simulation.simulation)
simulate_full_model() (in module glotaran.simulation.simulation)
skewness (glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian property)
source (glotaran.model.clp_penalties.EqualAreaPenalty property)
(glotaran.model.relation.Relation property)
source_intervals (glotaran.model.clp_penalties.EqualAreaPenalty property)
source_path (glotaran.project.result.Result attribute)
(glotaran.project.scheme.Scheme attribute)
(glotaran.typing.protocols.FileLoadableProtocol attribute)
(glotaran.utils.io.DatasetMapping property)
SpectralMegacomplex (class in glotaran.builtin.megacomplexes.spectral.spectral_megacomplex)
SpectralShape (class in glotaran.builtin.megacomplexes.spectral.shape)
SpectralShapeGaussian (class in glotaran.builtin.megacomplexes.spectral.shape)
SpectralShapeOne (class in glotaran.builtin.megacomplexes.spectral.shape)
SpectralShapeSkewedGaussian (class in glotaran.builtin.megacomplexes.spectral.shape)
SpectralShapeZero (class in glotaran.builtin.megacomplexes.spectral.shape)
split() (glotaran.utils.ipython.MarkdownStr method)
split_envvar_value() (glotaran.cli.commands.util.ValOrRangeOrList method)
splitlines() (glotaran.utils.ipython.MarkdownStr method)
standard_error (glotaran.parameter.parameter.Parameter property)
startswith() (glotaran.utils.ipython.MarkdownStr method)
STD_ERR (glotaran.parameter.parameter.Keys attribute)
string_to_tuple() (in module glotaran.utils.sanitize)
strip() (glotaran.utils.ipython.MarkdownStr method)
success (glotaran.project.result.Result attribute)
swap_dimensions() (glotaran.model.dataset_model.DatasetModel method)
swapcase() (glotaran.utils.ipython.MarkdownStr method)
T
target (glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex property)
(glotaran.model.clp_penalties.EqualAreaPenalty property)
(glotaran.model.constraint.OnlyConstraint property)
(glotaran.model.constraint.ZeroConstraint property)
(glotaran.model.relation.Relation property)
target_intervals (glotaran.model.clp_penalties.EqualAreaPenalty property)
termination_reason (glotaran.project.result.Result attribute)
time_explicit (glotaran.builtin.io.ascii.wavelength_time_explicit_file.DataFileType attribute)
TimeExplicitFile (class in glotaran.builtin.io.ascii.wavelength_time_explicit_file)
times() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
title() (glotaran.utils.ipython.MarkdownStr method)
to_csv() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.parameter.parameter_history.ParameterHistory method)
to_dataframe() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.parameter.parameter_history.ParameterHistory method)
to_info_dict() (glotaran.cli.commands.util.ValOrRangeOrList method)
to_parameter_dict_list() (glotaran.parameter.parameter_group.ParameterGroup method)
transformed_expression (glotaran.parameter.parameter.Parameter property)
translate() (glotaran.utils.ipython.MarkdownStr method)
TsvProjectIo (class in glotaran.builtin.io.pandas.tsv)
tuple_number (glotaran.utils.regex.RegexPattern attribute)
tuple_word (glotaran.utils.regex.RegexPattern attribute)
type (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex property)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex property)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex property)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex property)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex property)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero property)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex property)
U
update() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
update_parameter_expression() (glotaran.parameter.parameter_group.ParameterGroup method)
upper() (glotaran.utils.ipython.MarkdownStr method)
V
valid() (glotaran.model.model.Model method)
(glotaran.project.scheme.Scheme method)
valid_label() (glotaran.parameter.parameter.Parameter static method)
validate() (glotaran.builtin.megacomplexes.baseline.baseline_megacomplex.BaselineMegacomplex method)
(glotaran.builtin.megacomplexes.clp_guide.clp_guide_megacomplex.ClpGuideMegacomplex method)
(glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex method)
(glotaran.builtin.megacomplexes.damped_oscillation.damped_oscillation_megacomplex.DampedOscillationMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex method)
(glotaran.builtin.megacomplexes.decay.decay_sequential_megacomplex.DecaySequentialMegacomplex method)
(glotaran.builtin.megacomplexes.decay.initial_concentration.InitialConcentration method)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMeasured method)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian method)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeOne method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian method)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeZero method)
(glotaran.builtin.megacomplexes.spectral.spectral_megacomplex.SpectralMegacomplex method)
(glotaran.model.clp_penalties.EqualAreaPenalty method)
(glotaran.model.constraint.OnlyConstraint method)
(glotaran.model.constraint.ZeroConstraint method)
(glotaran.model.interval_property.IntervalProperty method)
(glotaran.model.model.Model method)
(glotaran.model.relation.Relation method)
(glotaran.model.weight.Weight method)
(glotaran.project.scheme.Scheme method)
validate_cmd() (in module glotaran.cli.commands.validate)
ValOrRangeOrList (class in glotaran.cli.commands.util)
value (glotaran.model.weight.Weight property)
(glotaran.parameter.parameter.Parameter property)
values() (glotaran.parameter.parameter_group.ParameterGroup method)
(glotaran.project.generators.generator.GeneratorArguments method)
(glotaran.utils.io.DatasetMapping method)
VARY (glotaran.parameter.parameter.Keys attribute)
vary (glotaran.parameter.parameter.Parameter property)
verify() (glotaran.project.result.Result method)
version (glotaran.project.project.Project attribute)
W
warn_deprecated() (in module glotaran.deprecation.deprecation_utils)
wavelength_explicit (glotaran.builtin.io.ascii.wavelength_time_explicit_file.DataFileType attribute)
WavelengthExplicitFile (class in glotaran.builtin.io.ascii.wavelength_time_explicit_file)
wavelengths() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
Weight (class in glotaran.model.weight)
weight (glotaran.model.clp_penalties.EqualAreaPenalty property)
(glotaran.optimization.optimization_group_calculator_linked.DatasetIndexModelGroup attribute)
weighted_residuals (glotaran.optimization.optimization_group.OptimizationGroup property)
width (glotaran.builtin.megacomplexes.coherent_artifact.coherent_artifact_megacomplex.CoherentArtifactMegacomplex property)
(glotaran.builtin.megacomplexes.decay.irf.IrfGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfMultiGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeGaussian property)
(glotaran.builtin.megacomplexes.spectral.shape.SpectralShapeSkewedGaussian property)
width_dispersion_coefficients (glotaran.builtin.megacomplexes.decay.irf.IrfSpectralGaussian property)
(glotaran.builtin.megacomplexes.decay.irf.IrfSpectralMultiGaussian property)
word (glotaran.utils.regex.RegexPattern attribute)
wrap_func_as_method() (in module glotaran.model.util)
write() (glotaran.builtin.io.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.io.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
write_data() (in module glotaran.cli.commands.util)
write_dict() (in module glotaran.builtin.io.yml.utils)
X
xtol (glotaran.project.scheme.Scheme attribute)
Y
YmlProjectIo (class in glotaran.builtin.io.yml.yml)
Z
ZeroConstraint (class in glotaran.model.constraint)
zfill() (glotaran.utils.ipython.MarkdownStr method)
Read the Docs
v: v0.6.0
Versions
latest
stable
v0.6.0
v0.5.1
v0.5.0
v0.5.0rc1
v0.4.2
v0.4.1
v0.4.0
v0.3.3
v0.3.2
v0.3.0
Downloads
On Read the Docs
Project Home
Builds