DecayMegacomplex

class glotaran.builtin.megacomplexes.decay.decay_megacomplex.DecayMegacomplex

Bases: glotaran.model.megacomplex.Megacomplex

A Megacomplex with one or more K-Matrices.

Attributes Summary

dimension	ModelProperty is an extension of the property decorator.
k_matrix	ModelProperty is an extension of the property decorator.
label	ModelProperty is an extension of the property decorator.
name
type	ModelProperty is an extension of the property decorator.

Methods Summary

as_dict
calculate_matrix
fill
finalize_data
from_dict
get_a_matrix
get_compartments
get_initial_concentration
get_k_matrix
get_parameter_labels
glotaran_dataset_model_items
glotaran_dataset_properties
glotaran_exclusive
glotaran_model_items
glotaran_unique
index_dependent
markdown
validate

Methods Documentation

as_dict() → dict

calculate_matrix(dataset_model: DatasetModel, indices: dict[str, int], **kwargs)

property dimension: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

fill(model: Model, parameters: ParameterGroup) → cls

finalize_data(dataset_model: glotaran.model.dataset_model.DatasetModel, dataset: xarray.core.dataset.Dataset, is_full_model: bool = False, as_global: bool = False)

classmethod from_dict(values: dict) → cls

get_a_matrix(dataset_model: glotaran.model.dataset_model.DatasetModel) → numpy.ndarray

get_compartments(dataset_model: DatasetModel) → list[str]

get_initial_concentration(dataset_model: glotaran.model.dataset_model.DatasetModel, normalized: bool = True) → numpy.ndarray

get_k_matrix() → glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix

get_parameter_labels() → list[str]

classmethod glotaran_dataset_model_items() → str

classmethod glotaran_dataset_properties() → str

classmethod glotaran_exclusive() → bool

classmethod glotaran_model_items() → str

classmethod glotaran_unique() → bool

index_dependent(dataset_model: glotaran.model.dataset_model.DatasetModel) → bool

property k_matrix: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

property label: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

markdown(all_parameters: ParameterGroup = None, initial_parameters: ParameterGroup = None) → MarkdownStr

name = 'decay'

property type: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

validate(model: Model, parameters: ParameterGroup | None = None) → list[str]