DecayParallelMegacomplex

class glotaran.builtin.megacomplexes.decay.decay_parallel_megacomplex.DecayParallelMegacomplex

Bases: glotaran.model.megacomplex.Megacomplex

Attributes Summary

compartments	ModelProperty is an extension of the property decorator.
dimension	ModelProperty is an extension of the property decorator.
label	ModelProperty is an extension of the property decorator.
name
rates	ModelProperty is an extension of the property decorator.
type	ModelProperty is an extension of the property decorator.

Methods Summary

as_dict
calculate_matrix
fill
finalize_data
from_dict
get_a_matrix
get_compartments
get_initial_concentration
get_k_matrix
get_parameter_labels
glotaran_dataset_model_items
glotaran_dataset_properties
glotaran_exclusive
glotaran_model_items
glotaran_unique
index_dependent
markdown
validate

Methods Documentation

as_dict() → dict

calculate_matrix(dataset_model: DatasetModel, indices: dict[str, int], **kwargs)

property compartments: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

property dimension: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

fill(model: Model, parameters: ParameterGroup) → cls

finalize_data(dataset_model: glotaran.model.dataset_model.DatasetModel, dataset: xarray.core.dataset.Dataset, is_full_model: bool = False, as_global: bool = False)

classmethod from_dict(values: dict) → cls

get_a_matrix(dataset_model: glotaran.model.dataset_model.DatasetModel) → numpy.ndarray

get_compartments(dataset_model: DatasetModel) → list[str]

get_initial_concentration(dataset_model: glotaran.model.dataset_model.DatasetModel, normalized: bool = True) → numpy.ndarray

get_k_matrix() → glotaran.builtin.megacomplexes.decay.k_matrix.KMatrix

get_parameter_labels() → list[str]

classmethod glotaran_dataset_model_items() → str

classmethod glotaran_dataset_properties() → str

classmethod glotaran_exclusive() → bool

classmethod glotaran_model_items() → str

classmethod glotaran_unique() → bool

index_dependent(dataset_model: glotaran.model.dataset_model.DatasetModel) → bool

property label: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

markdown(all_parameters: ParameterGroup = None, initial_parameters: ParameterGroup = None) → MarkdownStr

name = 'decay-parallel'

property rates: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

property type: model_property.glotaran_property_type

ModelProperty is an extension of the property decorator.

It adds convenience functions for meta programming model items.

validate(model: Model, parameters: ParameterGroup | None = None) → list[str]