pyglotaran
v0.3.0
Contents:
Introduction
Installation
Quickstart/Cheat-Sheet
History
Authors
User Documentation:
Overview
Data IO
Plotting
Modelling
Parameter
Optimizing
API Documentation
Developer Documentation:
Contributing
pyglotaran
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Z
A
a_matrix() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
a_matrix_as_markdown() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
a_matrix_non_unibranch() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
a_matrix_unibranch() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
add_command() (glotaran.cli.main.Cli method)
add_data_row() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
add_equal_area_penalties() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
add_group() (glotaran.parameter.parameter_group.ParameterGroup method)
add_parameter() (glotaran.parameter.parameter_group.ParameterGroup method)
add_spectral_constraints() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
add_spectral_relations() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
add_type() (glotaran.builtin.models.kinetic_image.irf.Irf class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.SpectralConstraint class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShape class method)
add_weights() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
additional_penalty() (glotaran.analysis.problem.Problem property)
(glotaran.analysis.result.Result property)
additional_penalty_function (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
additional_penalty_function() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
all() (glotaran.parameter.parameter_group.ParameterGroup method)
allow_extra_args (glotaran.cli.main.Cli attribute)
allow_interspersed_args (glotaran.cli.main.Cli attribute)
allow_none() (glotaran.model.property.ModelProperty property)
amplitude() (glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian property)
applies() (glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty method)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation method)
apply_kinetic_model_constraints() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
apply_spectral_constraints() (in module glotaran.builtin.models.kinetic_spectrum.spectral_constraints)
apply_spectral_penalties() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
apply_spectral_relations() (in module glotaran.builtin.models.kinetic_spectrum.spectral_relations)
axis (glotaran.analysis.problem.GroupedProblemDescriptor attribute)
B
backsweep() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
backsweep_period() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
bag() (glotaran.analysis.problem.Problem property)
baseline() (glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
C
calculate() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero method)
calculate_additional_penalty() (glotaran.analysis.problem.Problem method)
calculate_coherent_artifact() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
calculate_dispersion() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian method)
calculate_index_dependent_grouped_matrices() (glotaran.analysis.problem.Problem method)
calculate_index_dependent_grouped_residual() (glotaran.analysis.problem.Problem method)
calculate_index_dependent_ungrouped_matrices() (glotaran.analysis.problem.Problem method)
calculate_index_dependent_ungrouped_residual() (glotaran.analysis.problem.Problem method)
calculate_index_independent_grouped_matrices() (glotaran.analysis.problem.Problem method)
calculate_index_independent_grouped_residual() (glotaran.analysis.problem.Problem method)
calculate_index_independent_ungrouped_matrices() (glotaran.analysis.problem.Problem method)
calculate_index_independent_ungrouped_residual() (glotaran.analysis.problem.Problem method)
calculate_kinetic_matrix_gaussian_irf() (in module glotaran.builtin.models.kinetic_image.kinetic_image_matrix)
calculate_kinetic_matrix_no_irf() (in module glotaran.builtin.models.kinetic_image.kinetic_image_matrix)
calculate_matrices() (glotaran.analysis.problem.Problem method)
calculate_residual() (glotaran.analysis.problem.Problem method)
callback (glotaran.cli.main.Cli attribute)
center() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
center_dispersion() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
chi_square() (glotaran.analysis.result.Result property)
clear() (glotaran.parameter.parameter_group.ParameterGroup method)
Cli (class in glotaran.cli.main)
clp_label (glotaran.analysis.problem.LabelAndMatrix attribute)
clp_labels() (glotaran.analysis.problem.Problem property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
clps() (glotaran.analysis.problem.Problem property)
coherent_artifact_order() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
coherent_artifact_width() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
collect_usage_pieces() (glotaran.cli.main.Cli method)
combine() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
command() (glotaran.cli.main.Cli method)
commands (glotaran.cli.main.Cli attribute)
compartment() (glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint property)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint property)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation property)
compartments() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration property)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor method)
constrain_matrix_function (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
constrain_matrix_function() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
context_settings (glotaran.cli.main.Cli attribute)
convert() (glotaran.cli.commands.util.ValOrRangeOrList method)
copy() (glotaran.parameter.parameter_group.ParameterGroup method)
count() (glotaran.analysis.problem.GroupedProblem method)
(glotaran.analysis.problem.GroupedProblemDescriptor method)
(glotaran.analysis.problem.LabelAndMatrix method)
(glotaran.analysis.problem.ProblemDescriptor method)
covariance_matrix() (glotaran.analysis.result.Result property)
create_result_data() (glotaran.analysis.problem.Problem method)
create_spectral_relation_matrix() (in module glotaran.builtin.models.kinetic_spectrum.spectral_relations)
D
data (glotaran.analysis.problem.GroupedProblem attribute)
(glotaran.analysis.problem.ProblemDescriptor attribute)
data() (glotaran.analysis.problem.Problem property)
(glotaran.analysis.result.Result property)
(glotaran.analysis.scheme.Scheme property)
data_sizes (glotaran.analysis.problem.GroupedProblem attribute)
DataFileType (class in glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
dataset (glotaran.analysis.problem.ProblemDescriptor attribute)
dataset() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
DatasetDescriptor (class in glotaran.model.dataset_descriptor)
datasets() (glotaran.model.weight.Weight property)
degrees_of_freedom() (glotaran.analysis.result.Result property)
deleter() (glotaran.model.property.ModelProperty method)
descriptor (glotaran.analysis.problem.GroupedProblem attribute)
dispersion_center() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
E
eigen() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
empty() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix class method)
envvar_list_splitter (glotaran.cli.commands.util.ValOrRangeOrList attribute)
equal_area_penalties() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
EqualAreaPenalty (class in glotaran.builtin.models.kinetic_spectrum.spectral_penalties)
exclude_from_normalize() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration property)
ExplicitFile (class in glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
export() (in module glotaran.cli.commands.explore)
EXPR (glotaran.parameter.parameter.Keys attribute)
expression() (glotaran.parameter.parameter.Parameter property)
F
fail() (glotaran.cli.commands.util.ValOrRangeOrList method)
fdel (glotaran.model.property.ModelProperty attribute)
fget (glotaran.model.property.ModelProperty attribute)
file_reader() (in module glotaran.io.reader)
fill() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration method)
(glotaran.builtin.models.kinetic_image.irf.IrfGaussian method)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian method)
(glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor method)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty method)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero method)
(glotaran.model.dataset_descriptor.DatasetDescriptor method)
(glotaran.model.property.ModelProperty method)
(glotaran.model.weight.Weight method)
filled_dataset_descriptors() (glotaran.analysis.problem.Problem property)
finalize_data() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
finalize_kinetic_image_result() (in module glotaran.builtin.models.kinetic_image.kinetic_image_result)
finalize_kinetic_spectrum_result() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_result)
format_commands() (glotaran.cli.main.Cli method)
format_epilog() (glotaran.cli.main.Cli method)
format_help() (glotaran.cli.main.Cli method)
format_help_text() (glotaran.cli.main.Cli method)
format_options() (glotaran.cli.main.Cli method)
format_usage() (glotaran.cli.main.Cli method)
free_parameter_labels() (glotaran.analysis.result.Result property)
from_csv() (glotaran.parameter.parameter_group.ParameterGroup class method)
from_dataframe() (glotaran.parameter.parameter_group.ParameterGroup class method)
from_dict() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration class method)
(glotaran.builtin.models.kinetic_image.irf.IrfGaussian class method)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured class method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian class method)
(glotaran.builtin.models.kinetic_image.k_matrix.KMatrix class method)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor class method)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex class method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel class method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor class method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero class method)
(glotaran.model.base_model.Model class method)
(glotaran.model.dataset_descriptor.DatasetDescriptor class method)
(glotaran.model.weight.Weight class method)
(glotaran.parameter.parameter_group.ParameterGroup class method)
from_file() (glotaran.parameter.parameter_group.ParameterGroup class method)
from_list() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration class method)
(glotaran.builtin.models.kinetic_image.irf.IrfGaussian class method)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured class method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian class method)
(glotaran.builtin.models.kinetic_image.k_matrix.KMatrix class method)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor class method)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex class method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne class method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero class method)
(glotaran.model.dataset_descriptor.DatasetDescriptor class method)
(glotaran.model.weight.Weight class method)
(glotaran.parameter.parameter_group.ParameterGroup class method)
from_list_or_value() (glotaran.parameter.parameter.Parameter class method)
from_yaml() (glotaran.parameter.parameter_group.ParameterGroup class method)
from_yaml_file() (glotaran.analysis.scheme.Scheme class method)
(glotaran.parameter.parameter_group.ParameterGroup class method)
fromkeys() (glotaran.parameter.parameter_group.ParameterGroup method)
fset (glotaran.model.property.ModelProperty attribute)
ftol() (glotaran.analysis.scheme.Scheme property)
full() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
full_k_matrix() (glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex method)
full_label() (glotaran.parameter.parameter.Parameter property)
full_penalty() (glotaran.analysis.problem.Problem property)
G
get() (glotaran.parameter.parameter_group.ParameterGroup method)
get_command() (glotaran.cli.main.Cli method)
get_data_file_format() (in module glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
get_data_row() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_dataset() (glotaran.analysis.result.Result method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
get_explicit_axis() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_format_name() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_help() (glotaran.cli.main.Cli method)
get_help_option() (glotaran.cli.main.Cli method)
get_help_option_names() (glotaran.cli.main.Cli method)
get_initial_concentration() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
get_interval_number() (in module glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
get_irf() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
get_k_matrices() (glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor method)
get_k_matrix() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
get_label_value_and_bounds_arrays() (glotaran.parameter.parameter_group.ParameterGroup method)
get_megacomplex() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
get_metavar() (glotaran.cli.commands.util.ValOrRangeOrList method)
get_missing_message() (glotaran.cli.commands.util.ValOrRangeOrList method)
get_model() (in module glotaran.parse.register)
get_nr_roots() (glotaran.parameter.parameter_group.ParameterGroup method)
get_observations() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_params() (glotaran.cli.main.Cli method)
get_scheme() (glotaran.analysis.result.Result method)
get_secondary_axis() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
get_shape() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
get_short_help_str() (glotaran.cli.main.Cli method)
get_usage() (glotaran.cli.main.Cli method)
get_value_and_bounds_for_optimization() (glotaran.parameter.parameter.Parameter method)
getter() (glotaran.model.property.ModelProperty method)
global_axis (glotaran.analysis.problem.ProblemDescriptor attribute)
global_dimension (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel attribute)
global_interval() (glotaran.model.weight.Weight property)
global_matrix (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
global_matrix() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel static method)
glotaran
module
glotaran.analysis
module
glotaran.analysis.nnls
module
glotaran.analysis.optimize
module
glotaran.analysis.problem
module
glotaran.analysis.result
module
glotaran.analysis.scheme
module
glotaran.analysis.simulation
module
glotaran.analysis.variable_projection
module
glotaran.builtin
module
glotaran.builtin.file_formats
module
glotaran.builtin.file_formats.ascii
module
glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file
module
glotaran.builtin.file_formats.sdt
module
glotaran.builtin.file_formats.sdt.sdt_file_reader
module
glotaran.builtin.models
module
glotaran.builtin.models.kinetic_image
module
glotaran.builtin.models.kinetic_image.initial_concentration
module
glotaran.builtin.models.kinetic_image.irf
module
glotaran.builtin.models.kinetic_image.k_matrix
module
glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor
module
glotaran.builtin.models.kinetic_image.kinetic_image_matrix
module
glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex
module
glotaran.builtin.models.kinetic_image.kinetic_image_model
module
glotaran.builtin.models.kinetic_image.kinetic_image_result
module
glotaran.builtin.models.kinetic_spectrum
module
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor
module
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_matrix
module
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model
module
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_result
module
glotaran.builtin.models.kinetic_spectrum.spectral_constraints
module
glotaran.builtin.models.kinetic_spectrum.spectral_irf
module
glotaran.builtin.models.kinetic_spectrum.spectral_matrix
module
glotaran.builtin.models.kinetic_spectrum.spectral_penalties
module
glotaran.builtin.models.kinetic_spectrum.spectral_relations
module
glotaran.builtin.models.kinetic_spectrum.spectral_shape
module
glotaran.cli
module
glotaran.cli.commands
module
glotaran.cli.commands.explore
module
glotaran.cli.commands.export
module
glotaran.cli.commands.optimize
module
glotaran.cli.commands.pluginlist
module
glotaran.cli.commands.print
module
glotaran.cli.commands.util
module
glotaran.cli.commands.validate
module
glotaran.cli.main
module
glotaran.examples
module
glotaran.examples.sequential
module
glotaran.io
module
glotaran.io.prepare_dataset
module
glotaran.io.reader
module
glotaran.model
module
glotaran.model.attribute
module
glotaran.model.base_model
module
glotaran.model.dataset_descriptor
module
glotaran.model.decorator
module
glotaran.model.property
module
glotaran.model.util
module
glotaran.model.weight
module
glotaran.parameter
module
glotaran.parameter.parameter
module
glotaran.parameter.parameter_group
module
glotaran.parse
module
glotaran.parse.parser
module
glotaran.parse.register
module
glotaran.parse.util
module
group (glotaran.analysis.problem.GroupedProblem attribute)
group() (glotaran.cli.main.Cli method)
group_tolerance() (glotaran.analysis.scheme.Scheme property)
grouped() (glotaran.analysis.problem.Problem property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
GroupedProblem (class in glotaran.analysis.problem)
GroupedProblemDescriptor (class in glotaran.analysis.problem)
groups() (glotaran.analysis.problem.Problem property)
(glotaran.parameter.parameter_group.ParameterGroup method)
gtol() (glotaran.analysis.scheme.Scheme property)
H
has() (glotaran.parameter.parameter_group.ParameterGroup method)
has_additional_penalty_function (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
has_additional_penalty_function() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
has_kinetic_model_constraints() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
has_matrix_constraints_function (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
has_matrix_constraints_function() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
has_scaling (glotaran.analysis.problem.GroupedProblem attribute)
has_spectral_penalties() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
I
ignore_unknown_options (glotaran.cli.main.Cli attribute)
index (glotaran.analysis.problem.GroupedProblemDescriptor attribute)
index() (glotaran.analysis.problem.GroupedProblem method)
(glotaran.analysis.problem.LabelAndMatrix method)
(glotaran.analysis.problem.ProblemDescriptor method)
index_dependent() (glotaran.analysis.problem.Problem property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
index_dependent_matrix() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
(glotaran.model.base_model.Model property)
initial_concentration() (glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
initial_parameters() (glotaran.analysis.result.Result property)
InitialConcentration (class in glotaran.builtin.models.kinetic_image.initial_concentration)
interval() (glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint property)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint property)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation property)
invoke() (glotaran.cli.main.Cli method)
involved_compartments() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex property)
Irf (class in glotaran.builtin.models.kinetic_image.irf)
irf() (glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
IrfGaussian (class in glotaran.builtin.models.kinetic_image.irf)
IrfGaussianCoherentArtifact (class in glotaran.builtin.models.kinetic_spectrum.spectral_irf)
IrfMeasured (class in glotaran.builtin.models.kinetic_image.irf)
IrfMultiGaussian (class in glotaran.builtin.models.kinetic_image.irf)
IrfSpectralGaussian (class in glotaran.builtin.models.kinetic_spectrum.spectral_irf)
IrfSpectralMultiGaussian (class in glotaran.builtin.models.kinetic_spectrum.spectral_irf)
is_composite (glotaran.cli.commands.util.ValOrRangeOrList attribute)
is_unibranched() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
items() (glotaran.parameter.parameter_group.ParameterGroup method)
J
jacobian() (glotaran.analysis.result.Result property)
K
k_matrix() (glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
Keys (class in glotaran.parameter.parameter)
keys() (glotaran.parameter.parameter_group.ParameterGroup method)
kinetic_image_matrix() (in module glotaran.builtin.models.kinetic_image.kinetic_image_model)
kinetic_image_matrix_implementation() (in module glotaran.builtin.models.kinetic_image.kinetic_image_matrix)
kinetic_matrix() (in module glotaran.builtin.models.kinetic_image.kinetic_image_matrix)
kinetic_spectrum_matrix() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
KineticImageDatasetDescriptor (class in glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor)
KineticImageMegacomplex (class in glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex)
KineticImageModel (class in glotaran.builtin.models.kinetic_image.kinetic_image_model)
KineticSpectrumDatasetDescriptor (class in glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor)
KineticSpectrumModel (class in glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
KMatrix (class in glotaran.builtin.models.kinetic_image.k_matrix)
known_formats() (glotaran.parameter.parameter_group.ParameterGroup class method)
known_model() (in module glotaran.parse.register)
known_model_names() (in module glotaran.parse.register)
L
label (glotaran.analysis.problem.GroupedProblemDescriptor attribute)
label() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration property)
(glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_image.k_matrix.KMatrix property)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor property)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero property)
(glotaran.model.dataset_descriptor.DatasetDescriptor property)
(glotaran.parameter.parameter.Parameter property)
(glotaran.parameter.parameter_group.ParameterGroup property)
LabelAndMatrix (class in glotaran.analysis.problem)
list_commands() (glotaran.cli.main.Cli method)
list_commands_for_help() (glotaran.cli.main.Cli method)
list_string_to_tuple() (in module glotaran.parse.util)
load_dataset_file() (in module glotaran.cli.commands.util)
load_model_file() (in module glotaran.cli.commands.util)
load_parameter_file() (in module glotaran.cli.commands.util)
load_scheme_file() (in module glotaran.cli.commands.util)
load_yaml() (in module glotaran.parse.parser)
load_yaml_file() (in module glotaran.parse.parser)
location() (glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian property)
M
main() (glotaran.cli.main.Cli method)
make_context() (glotaran.cli.main.Cli method)
make_parser() (glotaran.cli.main.Cli method)
markdown() (glotaran.analysis.result.Result method)
(glotaran.analysis.scheme.Scheme method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(glotaran.model.base_model.Model method)
(glotaran.parameter.parameter_group.ParameterGroup method)
matrices() (glotaran.analysis.problem.Problem property)
matrix (glotaran.analysis.problem.LabelAndMatrix attribute)
matrix() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel static method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel static method)
matrix_as_markdown() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
MAX (glotaran.parameter.parameter.Keys attribute)
maximum() (glotaran.parameter.parameter.Parameter property)
maximum_number_function_evaluations() (glotaran.analysis.scheme.Scheme property)
megacomplex() (glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor property)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
(glotaran.model.dataset_descriptor.DatasetDescriptor property)
MIN (glotaran.parameter.parameter.Keys attribute)
minimum() (glotaran.parameter.parameter.Parameter property)
Model (class in glotaran.model.base_model)
model() (glotaran.analysis.problem.Problem property)
(glotaran.analysis.result.Result property)
(glotaran.analysis.scheme.Scheme property)
(in module glotaran.model.decorator)
model_attribute() (in module glotaran.model.attribute)
model_attribute_typed() (in module glotaran.model.attribute)
model_axis (glotaran.analysis.problem.ProblemDescriptor attribute)
model_dimension (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel attribute)
model_dispersion_with_wavenumber() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
model_interval() (glotaran.model.weight.Weight property)
model_type() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
(glotaran.model.base_model.Model property)
ModelProperty (class in glotaran.model.property)
module
glotaran
glotaran.analysis
glotaran.analysis.nnls
glotaran.analysis.optimize
glotaran.analysis.problem
glotaran.analysis.result
glotaran.analysis.scheme
glotaran.analysis.simulation
glotaran.analysis.variable_projection
glotaran.builtin
glotaran.builtin.file_formats
glotaran.builtin.file_formats.ascii
glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file
glotaran.builtin.file_formats.sdt
glotaran.builtin.file_formats.sdt.sdt_file_reader
glotaran.builtin.models
glotaran.builtin.models.kinetic_image
glotaran.builtin.models.kinetic_image.initial_concentration
glotaran.builtin.models.kinetic_image.irf
glotaran.builtin.models.kinetic_image.k_matrix
glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor
glotaran.builtin.models.kinetic_image.kinetic_image_matrix
glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex
glotaran.builtin.models.kinetic_image.kinetic_image_model
glotaran.builtin.models.kinetic_image.kinetic_image_result
glotaran.builtin.models.kinetic_spectrum
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_matrix
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model
glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_result
glotaran.builtin.models.kinetic_spectrum.spectral_constraints
glotaran.builtin.models.kinetic_spectrum.spectral_irf
glotaran.builtin.models.kinetic_spectrum.spectral_matrix
glotaran.builtin.models.kinetic_spectrum.spectral_penalties
glotaran.builtin.models.kinetic_spectrum.spectral_relations
glotaran.builtin.models.kinetic_spectrum.spectral_shape
glotaran.cli
glotaran.cli.commands
glotaran.cli.commands.explore
glotaran.cli.commands.export
glotaran.cli.commands.optimize
glotaran.cli.commands.pluginlist
glotaran.cli.commands.print
glotaran.cli.commands.util
glotaran.cli.commands.validate
glotaran.cli.main
glotaran.examples
glotaran.examples.sequential
glotaran.io
glotaran.io.prepare_dataset
glotaran.io.reader
glotaran.model
glotaran.model.attribute
glotaran.model.base_model
glotaran.model.dataset_descriptor
glotaran.model.decorator
glotaran.model.property
glotaran.model.util
glotaran.model.weight
glotaran.parameter
glotaran.parameter.parameter
glotaran.parameter.parameter_group
glotaran.parse
glotaran.parse.parser
glotaran.parse.register
glotaran.parse.util
mprint() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration method)
(glotaran.builtin.models.kinetic_image.irf.IrfGaussian method)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian method)
(glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor method)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty method)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero method)
(glotaran.model.dataset_descriptor.DatasetDescriptor method)
(glotaran.model.weight.Weight method)
N
name (glotaran.cli.commands.util.ValOrRangeOrList attribute)
(glotaran.cli.main.Cli attribute)
nnls() (glotaran.analysis.result.Result property)
NON_NEG (glotaran.parameter.parameter.Keys attribute)
non_negative() (glotaran.parameter.parameter.Parameter property)
non_negative_least_squares() (glotaran.analysis.scheme.Scheme property)
normalize() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
normalized() (glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration method)
number_of_data_points() (glotaran.analysis.result.Result property)
number_of_function_evaluations() (glotaran.analysis.result.Result property)
number_of_jacobian_evaluations() (glotaran.analysis.result.Result property)
number_of_variables() (glotaran.analysis.result.Result property)
O
OnlyConstraint (class in glotaran.builtin.models.kinetic_spectrum.spectral_constraints)
optimization_method() (glotaran.analysis.scheme.Scheme property)
optimize() (in module glotaran.analysis.optimize)
optimize_cmd() (in module glotaran.cli.commands.optimize)
optimize_problem() (in module glotaran.analysis.optimize)
optimized_parameters() (glotaran.analysis.result.Result property)
P
Parameter (class in glotaran.parameter.parameter)
parameter() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty property)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation property)
ParameterGroup (class in glotaran.parameter.parameter_group)
parameters() (glotaran.analysis.problem.Problem property)
(glotaran.analysis.scheme.Scheme property)
(glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration property)
params (glotaran.cli.main.Cli attribute)
parse_args() (glotaran.cli.main.Cli method)
parse_spec() (in module glotaran.parse.parser)
parse_yaml() (in module glotaran.parse.parser)
parse_yaml_file() (in module glotaran.parse.parser)
plugin_list_cmd() (in module glotaran.cli.commands.pluginlist)
pop() (glotaran.parameter.parameter_group.ParameterGroup method)
popitem() (glotaran.parameter.parameter_group.ParameterGroup method)
prepare_time_trace_dataset() (in module glotaran.io.prepare_dataset)
print_cmd() (in module glotaran.cli.commands.print)
Problem (class in glotaran.analysis.problem)
problem_list() (glotaran.analysis.scheme.Scheme method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(glotaran.model.base_model.Model method)
ProblemDescriptor (class in glotaran.analysis.problem)
R
rates() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
read() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
read_ascii_time_trace() (in module glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
read_data_file() (in module glotaran.io.reader)
read_sdt() (in module glotaran.builtin.file_formats.sdt.sdt_file_reader)
Reader (class in glotaran.io.reader)
reduced() (glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
reduced_chi_square() (glotaran.analysis.result.Result property)
reduced_clp_labels() (glotaran.analysis.problem.Problem property)
reduced_clps() (glotaran.analysis.problem.Problem property)
reduced_matrices() (glotaran.analysis.problem.Problem property)
register_model() (in module glotaran.parse.register)
reset() (glotaran.analysis.problem.Problem method)
residual_nnls() (in module glotaran.analysis.nnls)
residual_variable_projection() (in module glotaran.analysis.variable_projection)
residuals() (glotaran.analysis.problem.Problem property)
resolve_command() (glotaran.cli.main.Cli method)
Result (class in glotaran.analysis.result)
result_callback (glotaran.cli.main.Cli attribute)
resultcallback() (glotaran.cli.main.Cli method)
retrieve_clp_function (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel attribute)
retrieve_clp_function() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
retrieve_decay_assocatiated_data() (in module glotaran.builtin.models.kinetic_image.kinetic_image_result)
retrieve_irf() (in module glotaran.builtin.models.kinetic_image.kinetic_image_result)
retrieve_related_clps() (in module glotaran.builtin.models.kinetic_spectrum.spectral_relations)
retrieve_species_assocatiated_data() (in module glotaran.builtin.models.kinetic_image.kinetic_image_result)
retrieve_spectral_clps() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
root_group() (glotaran.parameter.parameter_group.ParameterGroup property)
root_mean_square_error() (glotaran.analysis.result.Result property)
S
sanitize_dict_keys() (in module glotaran.parse.util)
sanitize_dict_values() (in module glotaran.parse.util)
sanitize_list_with_broken_tuples() (in module glotaran.parse.util)
sanitize_yaml() (in module glotaran.parse.util)
save() (glotaran.analysis.result.Result method)
scale() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor property)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
(glotaran.model.dataset_descriptor.DatasetDescriptor property)
Scheme (class in glotaran.analysis.scheme)
scheme() (glotaran.analysis.problem.Problem property)
(glotaran.analysis.result.Result property)
select_data() (in module glotaran.cli.commands.util)
select_name() (in module glotaran.cli.commands.util)
set_dataset() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
set_explicit_axis() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
set_from_group() (glotaran.parameter.parameter.Parameter method)
set_from_label_and_value_arrays() (glotaran.parameter.parameter_group.ParameterGroup method)
set_initial_concentration() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
set_irf() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
set_k_matrix() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
set_megacomplex() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
set_shape() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
set_value_from_optimization() (glotaran.parameter.parameter.Parameter method)
setdefault() (glotaran.parameter.parameter_group.ParameterGroup method)
setter() (glotaran.model.property.ModelProperty method)
shape() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
signature_analysis() (in module glotaran.cli.commands.util)
simulate() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(glotaran.model.base_model.Model method)
(in module glotaran.analysis.simulation)
source() (glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty property)
source_intervals() (glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty property)
spectral_constraints() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
spectral_matrix() (in module glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model)
spectral_relations() (glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
SpectralConstraint (class in glotaran.builtin.models.kinetic_spectrum.spectral_constraints)
SpectralRelation (class in glotaran.builtin.models.kinetic_spectrum.spectral_relations)
SpectralShape (class in glotaran.builtin.models.kinetic_spectrum.spectral_shape)
SpectralShapeGaussian (class in glotaran.builtin.models.kinetic_spectrum.spectral_shape)
SpectralShapeOne (class in glotaran.builtin.models.kinetic_spectrum.spectral_shape)
SpectralShapeZero (class in glotaran.builtin.models.kinetic_spectrum.spectral_shape)
split_envvar_value() (glotaran.cli.commands.util.ValOrRangeOrList method)
standard_error() (glotaran.parameter.parameter.Parameter property)
string_to_tuple() (in module glotaran.parse.util)
success() (glotaran.analysis.result.Result property)
T
target() (glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty property)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation property)
target_intervals() (glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty property)
termination_reason() (glotaran.analysis.result.Result property)
time_explicit (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.DataFileType attribute)
TimeExplicitFile (class in glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
times() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
to_csv() (glotaran.parameter.parameter_group.ParameterGroup method)
to_dataframe() (glotaran.parameter.parameter_group.ParameterGroup method)
transformed_expression() (glotaran.parameter.parameter.Parameter property)
type() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint property)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero property)
U
update() (glotaran.parameter.parameter_group.ParameterGroup method)
update_parameter_expression() (glotaran.parameter.parameter_group.ParameterGroup method)
V
valid() (glotaran.analysis.scheme.Scheme method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(glotaran.model.base_model.Model method)
valid_label() (glotaran.parameter.parameter.Parameter class method)
validate() (glotaran.analysis.scheme.Scheme method)
(glotaran.builtin.models.kinetic_image.initial_concentration.InitialConcentration method)
(glotaran.builtin.models.kinetic_image.irf.IrfGaussian method)
(glotaran.builtin.models.kinetic_image.irf.IrfMeasured method)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian method)
(glotaran.builtin.models.kinetic_image.k_matrix.KMatrix method)
(glotaran.builtin.models.kinetic_image.kinetic_image_dataset_descriptor.KineticImageDatasetDescriptor method)
(glotaran.builtin.models.kinetic_image.kinetic_image_megacomplex.KineticImageMegacomplex method)
(glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_dataset_descriptor.KineticSpectrumDatasetDescriptor method)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.OnlyConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_constraints.ZeroConstraint method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty method)
(glotaran.builtin.models.kinetic_spectrum.spectral_relations.SpectralRelation method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeOne method)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeZero method)
(glotaran.model.base_model.Model method)
(glotaran.model.dataset_descriptor.DatasetDescriptor method)
(glotaran.model.property.ModelProperty method)
(glotaran.model.weight.Weight method)
validate_cmd() (in module glotaran.cli.commands.validate)
ValOrRangeOrList (class in glotaran.cli.commands.util)
value() (glotaran.model.weight.Weight property)
(glotaran.parameter.parameter.Parameter property)
values() (glotaran.parameter.parameter_group.ParameterGroup method)
VARY (glotaran.parameter.parameter.Keys attribute)
vary() (glotaran.parameter.parameter.Parameter property)
W
wavelength_explicit (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.DataFileType attribute)
WavelengthExplicitFile (class in glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
wavelengths() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
Weight (class in glotaran.model.weight)
weight (glotaran.analysis.problem.GroupedProblem attribute)
(glotaran.analysis.problem.ProblemDescriptor attribute)
weight() (glotaran.builtin.models.kinetic_spectrum.spectral_penalties.EqualAreaPenalty property)
weighted_residuals() (glotaran.analysis.problem.Problem property)
weights() (glotaran.builtin.models.kinetic_image.kinetic_image_model.KineticImageModel property)
(glotaran.builtin.models.kinetic_spectrum.kinetic_spectrum_model.KineticSpectrumModel property)
width() (glotaran.builtin.models.kinetic_image.irf.IrfGaussian property)
(glotaran.builtin.models.kinetic_image.irf.IrfMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_shape.SpectralShapeGaussian property)
width_dispersion() (glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfGaussianCoherentArtifact property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralGaussian property)
(glotaran.builtin.models.kinetic_spectrum.spectral_irf.IrfSpectralMultiGaussian property)
wrap_func_as_method() (in module glotaran.model.util)
write() (glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.ExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.TimeExplicitFile method)
(glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file.WavelengthExplicitFile method)
write_ascii_time_trace() (in module glotaran.builtin.file_formats.ascii.wavelength_time_explicit_file)
write_data() (in module glotaran.cli.commands.util)
X
xtol() (glotaran.analysis.scheme.Scheme property)
Z
ZeroConstraint (class in glotaran.builtin.models.kinetic_spectrum.spectral_constraints)
Read the Docs
v: v0.3.0
Versions
latest
stable
v0.3.0
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds